Neogen Informatics Inc.

Could not join us live for Tracking Pathway Activity Across Time and Conditions? The webinar is on our YouTube channel now.…

Could not join us live for Tracking Pathway Activity Across Time and Conditions? The webinar is on our YouTube channel now.

Our colleague Marta led the session on time-course RNA-seq with maSigPro, comparing gene expression patterns between conditions, and pathway analysis for non-model organisms. We used a real Cladonia lichen dataset and ran everything in OmicsBox, from dynamic gene clusters to enriched pathways.

Grab a coffee and watch at your own pace.

https://www.youtube.com/watch?v=V2lOSOKqE7s

New on the BioBam blog: a clear tutorial on differential expression analysis in OmicsBox. 🧬

edgeR and DESeq2 are the gold-standard tools for this step, but applying them usually means wrestling with R scripts and parameter files. Marta Benegas Coll shows how the same analyses run inside OmicsBox with a guided interface, flexible experimental designs (Simple, Paired, Multifactorial, and Interaction), and blocking factors for unwanted variability.

The results are fully interactive: a filterable table, volcano plots, MA plots, MDS plots, and heatmaps, connected directly to functional enrichment with Fisher's Exact Test and GSEA. From raw reads to enriched pathways in one place.

Read it here: https://www.biobam.com/differential-expression-analysis-made-easy-with-omicsbox/

Learn how to do a functional analysis using OmicsBox

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